PUBLICATIONS
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2018
On-Surface Bottom-Up Synthesis of Azine Derivatives Displaying Strong Acceptor Behavior
N. Ruiz del Arbol, I. Palacio, G. Otero-Irurueta, J.I. Martínez, P. de Andres, O. Stetsovych, M. Moro-Lagares, P. Mutombo, M. Svec, P. Jelínek, A. Cossaro, L. Floreano, G.J. Ellis, M. F. López, J. A. Martín-Gago
Angew. Chem. Int. Ed. 57 (2018) 8582 - 8586.
J. Hellerstedt, A. Cahlík, M. Švec, B. de la Torre, M. Moro-Lagares, T. Chutora, B. Papoušková, G. Zoppellaro, P. Mutombo, M. Ruben, R. Zbořil, P. Jelinek
Nanoscale 10 (2018) 15553 - 15563.
Iron-based trinuclear metal-organic nanostructures on a surface with local charge accumulation
C. Krull, M. Castelli, P. Hapala, D. Kumar, A. Tadich, M. Capsoni, M. T. Edmonds, J. Hellerstedt, S. A. Burke, P. Jelinek, A. Schiffrin
Nat. Commun. 9 (2018) 3211(1) - 3211(7).
Non-covalent control of spin-state in metal-organic complex by positioning on N-doped graphene
B. de la Torre, M. Švec, P. Hapala, J. Redondo, O. Krejčí, R. Lo, D. Manna, A. Sarmah, D. Nachtigallová, J. Tuček, P. Błoński, M. Otyepka, R. Zbořil, P. Hobza, P. Jelínek
Nat. Commun. 9 (2018) 2831(1) - 2831(9).
The effect of hydration number on the interfacial transport of sodium ions
J. Peng, D. Cao, Z. He, J. Guo, P. Hapala, R. Ma, B. Cheng, J. Chen, W. J. Xie, X.-Zh. Li, P. Jelínek, L.-M. Xu, Y. Q. Gao, E.-G. Wang, Y. Jiang
Nature 557 (2018) 701 - 705.
J. Peng, J. Guo, P. Hapala, D. Cao, R. Ma, B. Cheng, L. Xu, M. Ondráček, P. Jelínek, E. Wang, Y. Jiang
Nat. Commun. 9 (2018) 122(1) - 122(7).
Simple device for the growth of micrometer-sized monocrystalline single-layer graphene on SiC (0001)
J. Redondo, M. Telychko, P. Procházka, M. Konečný, J. Berger, M. Vondráček, J. Čechal, P. Jelínek, M. Švec
J. Vac. Sci. Technol. A 36 (2018) 031401-1 - 031401-6.
Large converse piezoelectric effect measured on a single molecule on a metallic surface
O. Stetsovych, P. Mutombo, M. Švec, M. Šámal, J. Nejedlý, I. Císařová, H. Vázquez, M. Moro-Lagares, J. Berger, J. Vacek, I. G. Stará, I. Starý, P. Jelínek
J. Am. Chem. Soc. 140 (2018) 940 - 946.
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2017
Study of uncertainties of height measurements of monoatomic steps on Si 5x5 using DFT
A. Charvátová Campbell, Pavel Jelínek, P. Klapetek
Meas. Sci. Technol. 28 (2017) 034005(1) - 034005(6).
Stable Au–C bonds to the substrate for fullerene-based nanostructures
T. Chutora, J. Redondo, B. de la Torre, M. Švec, P. Jelínek, H. Vazquez
Beilstein J. Nanotechnol. 8 (2017) 1073 - 1079.
Bruno de la Torre, Martin Švec, Giuseppe Foti, Ondřej Krejčí, Prokop Hapala, Aran Garcia-Lekue, Thomas Frederiksen, Radek Zbořil, Andres Arnau, Héctor Vázquez, and Pavel Jelínek
Phys. Rev. Lett. 119 (2017) 166001(1) - 166001(6).
High resolution SPM imaging of organic molecules with functionalized tips
P. Jelínek
J. Phys.-Condens. Mat. 29 (2017) 343002(1) - 343002(18).
Principles and simulations of high-resolution STM imaging with a flexible tip apex
O. Krejčí, P. Hapala, M. Ondráček, P. Jelínek
Phys. Rev. B 95 (2017) 045407(1) - 045407(9).
Real-Time Elucidation of Catalytic Pathways in CO Hydrogenation on Ru
J. LaRue, O. Krejčí, L. Yu, M. Beye, M. L. Ng, H. Öberg, H. Xin, G. Mercurio, S. Moeller, J. J. Turner, D. Nordlund, R. Coffee, M. P. Minitti, W. Wurth, L. G. M. Pettersson, H. Öström, A. Nilsson, F. Abild-Pedersen, H. Ogasawara
J. Phys. Chem. Lett. 8 (2017) 3820 - 3825.
Donor–Acceptor Properties of a Single-Molecule Altered by On-Surface Complex Formation
T. Meier, R. Pawlak, Sh. Kawai, Y. Geng, X. Liu, S. Decurtins, P. Hapala, A. Baratoff, Sh.-X. Liu, P. Jelínek, E. Meyer, Th. Glatzel
ACS Nano 11 (2017) 8413 - 8420.
Electronegativity determination of individual surface atoms by atomic force microscopy
J. Onoda, M. Ondáček, P. Jelínek, Y. Sugimoto
Nat. Commun. 8 (2017) 15155(1) - 15155(6).
From helical to planar chirality by on-surface chemistry
O. Stetsovych, M. Švec, J. Vacek, J. Vacek Chocholoušová, A. Jančařík, J. Rybáček, K. Kosmider, I. G. Stará, P. Jelínek, I. Starý
Nat. Chem. 9 (2017) 213 - 218.
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2016
Study of Ferrocene Dicarboxylic Acid on Substrates of Varying Chemical Activity
J. Berger, K. Kośmider, O. Stetsovych, M. Vondráček, P. Hapala, E. J. Spadafora, M. Švec, P. Jelínek
J. Phys. Chem. C 120 (2016) 21955 - 21961.
Characteristic Contrast in Δfmin Maps of Organic Molecules Using Atomic Force Microscopy
N. J. van der Heijden, P. Hapala, J. A. Rombouts, J. van der Lit, D. Smith, P. Mutombo, M. Švec, P. Jelinek, I. Swart
ACS Nano 10 (2016) 8517 - 8525.
J. van der Lit, F. Di Cicco, P. Hapala, P. Jelinek, I. Swart
Phys. Rev. Lett. 116 (2016) 096102-1 - 096102-5.
Mapping the electrostatic force field of single molecules from high-resolution scanning probe images
P. Hapala, M. Svec, O. Stetsovych, N. J. van der Heijden, M. Ondracek ,J. van der Lit, P. Mutombo, I. Swart, P. Jelinek
Nat. Commun. 7 (2016) 11560(1) - 11560(8).
Tuning the conductance of benzene-based single-molecule junctions
W. Kamiski, R. Topolnicki, P.Hapala, P. Jelínek, R. Kucharczyk
Org. Electron. 34 (2016) 254 - 261.
Control of Reactivity and Regioselectivity for On-Surface Dehydrogenative Aryl–Aryl Bond Formation
N. Kocić, X. Liu, S. Chen, S. Decurtins, O. Krejčí, P. Jelínek, J. Repp, S.-X. Liu
J. Am. Chem. Soc. 138 (2016) 5585 - 5593.
O. Krejčí, P. Matvija, P. Zimmermann, P. Sobotík, I. Ošťádal, P. Kocán
J. Phys. Chem. C 120 (2016) 9200 - 9206.
Interaction of Gold with a Pinwheel TiO∼1.2 Film Formed on Rh(111) Facet: STM and DFT Studies
P.Mutombo, R. Gubo, A. Berko
J. Phys. Chem. C 120 (23) (2016) 12917 - 12923.
Charge-state dynamics in electrostatic force spectroscopy
M. Ondráček, P. Hapala, P. Jelínek
Nanotechnology 27 (2016) 274005(1) - 274005(13).
O. Ranasingha, H. Wang, V. Zobač, P. Jelínek, G. Panapitiya, A. J. Neukirch∥, O. V. Prezhdo, J. P. Lewis
J. Phys. Chem. Lett. 7 (2016) 1563 - 1569.
Structural and Electronic Properties of Nitrogen-Doped Graphene
J. Sforzini, P. Hapala, M. Franke, G. van Straaten, A. Stöhr, S. Link, S. Soubatch, P. Jelínek, T.-L. Lee, U. Starke, M. Švec, F. C. Bocquet, F. S. Tautz
Phys. Rev. Lett. 116 (2016) 126805(1) - 126805(6).
Transformation of metallic boron into substitutional dopants in graphene on 6H-SIC(0001)
J. Sforzini, M. Telychko, O. Krejčí, M. Vondráček, M. Švec., F. C. Bocquet, F. S. Tautz
Phys. Rev. B 93 (2016) 041302-1 - 041302-4.
Non-adiabatic molecular dynamic simulations of opening reaction of molecular junctions
V. Zobač, J.P. Lewis, P. Jelínek
Nanotechnology 27 (2016) 285202(1) - 285202(8).
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2015
Probing Charges on the Atomic Scale by Means of Atomic Force Microscopy
F. Albrecht, J. Repp, M. Fleischmann, M. Scheer, M. Ondráček, P. Jelínek
Phys. Rev. Lett. 115 (2015) 076101-1 - 076101-5.
María Arroyo-Hernández, Martin Švec, Celia Rogero, Carlos Briones, José Ángel Martín-Gago, José Luis Costa-Krämer
J. Phys.-Condens. Mat. 26 (5) (2015) 055010 - 055014.
Force-Driven Single-Atom Manipulation on a Low-Reactive Si Surface for Tip Sharpening
J. Berger, E. J. Spadafora, P. Mutombo, P. Jelínek, M. Švec
Small 11 (2015) 3686 - 3693.
Charge Redistribution and Transport in Molecular Contacts
M. Corso, M. Ondráček, Ch. Lotze, P. Hapala, K. J. Franke, P. Jelínek, J. I. Pascual
Phys. Rev. Lett. 115 (2015) 136101(1) - 136101(5).
Chemical structure imaging of a single molecule by atomic force microscopy at room temperature
K. Iwata, Sh. Yamazaki, P. Mutombo, P. Hapala, M. Ondráček, P. Jelínek, Y. Sugimoto
Nat. Commun. 6 (2015) 7766(1) - 7766(6).
P. Kocán, O.Krejčí, H. Tochihara
J. Vac. Sci. Technol. A 33 (2015) 021408-1 - 021408-8.
Ortho and Para Hydrogen Dimers on G/SiC (0001): combined STM and DFT study
Pablo Merino, Martin Švec, Jose Ignacio Martinez, Pingo Mutombo, César González, José Ángel Martin-Gago, Pedro L de Andrés Rodriguez, Pavel Jelinek
Langmuir 31 (1) (2015) 233 - 239.
Imaging Three-Dimensional Surface Objects with Submolecular Resolution by Atomic Force Microscopy
César Moreno, Oleksandr Stetsovych, Tomoko K. Shimizu, Oscar Custance
Nano Lett. 15 (2015) 2257 - 2262.
A.J. Neukirch, J. Park, V. Zobac, H. Wang, P. Jelinek, O. V. Prezhdo, H.-C. Zhou, J. P. Lewis
J. Phys.-Condens. Mat. 27 (2015) 134208(1) - 134208(11).
Ab initio Study of Atomic Disorder on As-rich GaAs(111)A Surface
O. Romanyuk, P. Mutombo, F. Grosse
Surf. Sci. 641 (2015) 330 - 335.
Graphene on SiC (0001) inspected by dynamic atomic force microscopy at room temperature
Mykola Telychko, Jan Berger, Zsolt Majzik, Pavel Jelínek, Martin Švec
Beilstein J. Nanotechnol. 6 (2015) 901 - 906.
Electronic and Chemical Properties of Donor, Acceptor Centers in Graphene
M. Telychko, P. Mutombo, P. Merino, P. Hapala, M. Ondráček, F.C. Bocquet, J. Sforzini, O. Stetsovych, M. Vondráček, P. Jelínek, M. Švec
ACS Nano 9 (2015) 9180 - 9187.
Sh. Yamazaki, K. Maeda, Y. Sugimoto, M. Abe, V. Zobač, P. Pou, L. Rodrigo, P. Mutombo, R. Perez, P. Jelínek, S. Morita
Nano Lett. 15 (2015) 4356 - 4363.
Photo-induced reactions from efficient molecular dynamics with electronic transitions using the FIREBALL local-orbital density functional theory formalism
V. Zobač, J.P. Lewis, E. Abad, J.I. Mendieta-Moreno, P. Hapala, P. Jelínek, J. Ortega
J. Phys.-Condens. Mat. 27 (2015) 175002(1) - 175002(11).
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2014
Mechanism of high-resolution STM/AFM imaging with functionalized tips
P. Hapala, G. Kichin, Ch. Wagner, F. S. Tautz, R. Temirov, P. Jelínek
Phys. Rev. B 90 (2014) 085421(1) - 085421(9).
Origin of High-Resolution IETS-STM Images of Organic Molecules with Functionalized Tips
P. Hapala, R. Temirov, F. S. Tautz, P. Jelínek
Phys. Rev. Lett. 113 (2014) 226101(1) - 226101(5).
Direct Bandgap Silicon: Tensile-Strained Silicon Nanocrystals
K. Kůsová, P. Hapala, J. Valenta, P. Jelínek, O. Cibulka, L. Ondič, I. Pelant
Adv. Mater. Interf. 1 (2014) 1300042(1) - 1300042(9).
Graphene etching on SiC grains as a path to interstellar polycyclic aromatic hydrocarbons formation
P. Merino, M. Švec, J.I. Martinez, P. Jelínek, P. Lacovig, M. Dalmiglio, S. Lizzit, P. Soukiassian, J. Cernicharo, J.A. Martin-Gago
Nat. Commun. 5 (2014) 3054(1) - 3054(9).
P. Mutombo, O. Romanyuk
J. Appl. Phys. 115 (2014) 203508-1 - 203508-5.
J. Onoda, M. Ondráček, A, Yurtsever, P. Jelínek, Y. Sugimoto
Appl. Phys. Lett. 104 (2014) 133107(1) - 133107(4).
Charge Trapping at the Step Edges of TiO2 Anatase (101)
M. Setvín, X. Hao, B. Daniel, J. Pavelec, Z. Novotny, G. S. Parkinson, M. Schmid, G. Kresse, C. Franchini, U. Diebold
Angew. Chem. Int. Ed. 53 (2014) 4714 - 4716.
E. J. Spadafora, J. Berger, P. Mutombo, M. Telychko, M. Švec, Z. Majzik, A. B. McLean, P. Jelínek
J. Phys. Chem. C 118 (2014) 15744 - 15753.
M. Švec, P. Hapala, M. Ondráček, P. Merino, M. Blanco-Rey, P. Mutombo, M. Vondráček, Y. Polyak, V. Cháb, J. A. Martín Gago, P. Jelínek
Phys. Rev. B 89 (2014) 201412(1) - 201412(5).
M. Telychko, P. Mutombo, M. Ondráček, P. Hapala, F.C. Bocquet, J. Kolorenč, M. Vondráček, P. Jelínek, M. Švec
ACS Nano 8 (2014) 7318 - 7324.
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2013
Calculation of non-adiabatic coupling vectors in a local-orbital basis set
E. Abad, J. P Lewis, V. Zobač, P. Hapala, P. Jelínek, J. Ortega
J. Chem. Phys. 138 (2013) 154106(1) - 154106(8).
Characterization of the mechanical properties of qPlus sensors
J. Berger, M. Švec, M. Müller, M. Ledinský, A. Fejfar, P. Jelínek, Z. Majzik
Beilstein J. Nanotechnol. 4 (2013) 1 - 9.
Nucleation on a stepped surface with an Ehrlich–Schwöbel barrier
Z. Chromcova, M. C. Tringides and Z. Chvoj
J. Phys.-Condens. Mat. 25 (2013) 265003(1) - 265003(8).
Theoretical analysis of electronic band structure of 2- to 3-nm Si nanocrystals
P. Hapala, K. Kůsová, I. Pelant, P. Jelínek
Phys. Rev. B 87 (2013) 195420(1) - 195420(13).
Z. Majzik, B. Drevniok, W. Kamiński, M. Ondráček, A. B. McLean, P. Jelínek
ACS Nano 7 (2013) 2686 - 2692.
Combined AFM and STM measurements of a silicene sheet grown on the Ag(111) surface
Z. Majzik, M.R. Tchalala, M. Švec, P. Hapala, H. Enriquez, A. Kara, A. J. Mayne, G. Dujardin, P. Jelínek, H. Oughaddou
J. Phys.-Condens. Mat. 25 (2013) 225301(1) - 225301(6).
M. Mašín, L. Bergqvist, J. Kudrnovský, M. Kotrla, V. Drchal
Phys. Rev. B 87 (2013) 075452(1) - 075452(8).
Critical Temperatures of Random Iron–Cobalt Overlayers on the fcc-Cu(001) Substrate
M. Mašín, L. Bergqvist, J. Kudrnovský, M. Kotrla, V. Drchal
J. Superconductivity and Novel Magnetism 26 (2013) 809 - 812.
Multiscale modeling of submonolayer growth for Fe/Mo(110)
M. Mašín, M. Kotrla, B. Yang, M. Asta, M. O. Jahma, and T. Ala-Nissila
Eur. Phys. J. B 86 (2013) 359 - 365.
Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1
P. Sobotík, M. Setvín, P. Zimmermann, P. Kocán, I. Ošt’ádal, P. Mutombo, M. Ondráček, P. Jelínek
Phys. Rev. B 88 (2013) 205406(1) - 205406(7).
Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance
Y. Sugimoto, M. Ondráček, M. Abe, P. Pou, S. Morita, R. Pérez, F. Flores, P. Jelínek
Phys. Rev. Lett. 111 (2013) 106803(1) - 106803(5).
Role of Tip Chemical Reactivity on Atom Manipulation Process in Dynamic Force Microscopy
Y. Sugimoto, A. Yurtsever, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
ACS Nano 7 (2013) 7370 - 7376.
Atomic Structure Affects the Directional Dependence of Friction
A. J. Weymouth, D. Meuer, P. Mutombo, T. Wutscher, M. Ondráček, P. Jelínek, F. J. Giessibl
Phys. Rev. Lett. 111 (2013) 126103(1) - 126103(4).
A. Yurtsever, Y. Sugimoto, H. Tanaka, M. Abe, S. Morita, M. Ondráček, P. Pou, R. Pérez, P. Jelínek
Phys. Rev. B 87 (2013) 155403(1) - 155403(10)