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For succesful simulation of STM, we will need (except the STM code) several files. First of all we'll need the right “Fdata” directory (or the link) at our computation directory. Even this files, we will use:
Atomo_i 
options.inp 
scan.inp 
struc.inp 
samplek.kpts 
tip_e_str.inp 
tip_g_str.inp 
tip_sample_i_j.inp (interaction_i_j.dat)
Let's have a look on them.
 
This files contains information about Hamiltonian of each atom of the elementary cell of the sample. Their number is the same like the number of atoms in “*.bas” file (which is not necessary here).